TLDR
To reproduce.
Enable Authentication Method: WPA3-Personal for 2.4GHz
To "fix".
Enable Authentication Method: WPA2-Personal for 2.4GHz OR
Enable Authentication Method: WPA2/WPA3-Personal for 2.4GHz
Noob here, consider my input as such.
Bumped into this thread on my RSS Feed.
I see this thread is for Asuswrt-Merlin AddOns, yet to try Merlin, 
@sfx2000 suggested OP try stock. Well, I am and was.
Single unit.
RT-AX88U Pro
Current Version : 3.0.0.6.102_21514
Previous Version: 3.0.0.4.388.23110
What is mystery? (Just a guess.)
Note: BSSID vs SSID.
When I enable, Authentication Method: WPA3-Personal for 2.4GHz, I get the mystery 2.4GHz WPA2 SSID with the same BSSID as 5GHz WPA3 SSID.
Example, BSSID and SSID modified.
OS: Ubuntu 23.10 (Mantic Minotaur)
	
	
	
		Bash:
	
	
		❯  nmcli dev wifi
IN-USE  BSSID              SSID              MODE   CHAN  RATE        SIGNAL  BARS  SECURITY
        44:44:44:44:44:44  TWOPOINTFOUR      Infra  3     540 Mbit/s  77      ▂▄▆_  WPA3
        22:22:22:22:22:22  VERYLONGMYSTERY   Infra  3     540 Mbit/s  75      ▂▄▆_  WPA2
*       22:22:22:22:22:22  FIVE              Infra  153   540 Mbit/s  68      ▂▄▆_  WPA3
	 
 
This is what I did.
*PASS = no mystery SSID
*FAIL = mystery SSID
Quick test with bellow settings.
Factory default: Restore

 Initialize all the settings, and clear all the data log for AiProtection, Traffic Analyzer, and Web History.
	
	
	
		Code:
	
	
		✅PASS
Smart Connect
Authentication Method: WPA2-Personal
❌FAIL
Smart Connect
Authentication Method: WPA3-Personal
✅PASS
2.4 GHz
SSID: SAME
Authentication Method: WPA2-Personal
5GHz
SSID: SAME
Authentication Method: WPA2-Personal
✅PASS
2.4 GHz
SSID: SAME
Authentication Method: WPA2-Personal
5GHz
SSID: SAME
Authentication Method: WPA3-Personal
❌FAIL
2.4 GHz
SSID: SAME
Authentication Method: WPA3-Personal
5GHz
SSID: SAME
Authentication Method: WPA3-Personal
❌FAIL
2.4 GHz
SSID: DIFFERENT
Authentication Method: WPA3-Personal
5GHz
SSID: NOTSAME
Authentication Method: WPA3-Personal
✅PASS (partial, mystery shows up, goes away in about 1min. Reoccur:NA)
2.4 GHz
SSID: EXAMPLE
Authentication Method: WPA3-Personal
5GHz
SSID: EXAMPLE
Authentication Method: WPA2-Personal
✅PASS (partial, mystery shows up, goes away in about 1min. Reoccur:NA)
2.4 GHz
SSID: DIFFERENT
Authentication Method: WPA3-Personal
5GHz
SSID: NOTSAME
Authentication Method: WPA2-Personal
	 
 
I forgot to watch the logs.
I don't remember for sure if Previous Version: 3.0.0.4.388.23110 had this "issue". I think it did.